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LOCUS AF009392 1176 bp DNA linear VRL 11-AUG-1997
DEFINITION HIV-1 isolate 92TH022 from Thailand, pol polyprotein (pol) gene,
partial cds
ACCESSION AF009392
VERSION AF009392.1 GI:2338331
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1176)
Show all sequences for reference 1
AUTHORS Cornelissen,M., van Den Burg,R., Zorgdrager,F., Lukashov,V. and
Goudsmit,J.
TITLE pol gene diversity of five human immunodeficiency virus type 1
subtypes: evidence for naturally occurring mutations that
contribute to drug resistance, limited recombination patterns, and
common ancestry for subtypes B and D
JOURNAL J. Virol. 71 (9), 6348-6358 (1997)
PUBMED 9261352
REFERENCE 2 (bases 1 to 1176)
Show all sequences for reference 2
AUTHORS Cornelissen,M.T.E., Van de Burg,R., Zorgdrager,F., Lukashov,V. and
Goudsmit,J.
TITLE Direct Submission
JOURNAL Submitted (19-JUN-1997) Department of Human Retrovirus Laboratory,
Academic Medical Centre, Meibergdreef 15, Amsterdam 1105AZ, The
Netherlands
REFERENCE 3
Show all sequences for reference 3
AUTHORS WHO Global Programme on AIDS. and WHO Global Programme on AIDS
TITLE HIV type 1 variation in World Health Organization-sponsored vaccine
evaluation sites: genetic screening, sequence analysis, and
preliminary biological characterization of selected viral strains.
WHO Network for HIV Isolation and Characterization
JOURNAL AIDS Res. Hum. Retroviruses 10 (11), 1327-1343 (1994)
PUBMED 7545977
COMMENT Isolated from seropositive individual in Thailand (TH) for the
UNAIDS Network for HIV Isolation and Characterization. Biotypes
were determined by MT-2 syncytium assay; however, both
syncytium-inducing (SI) and non-syncytium-inducing (NSI) variants
may be present in the viral "swarm" for each isolate. Recent
studies indicate that NSI isolates contain predominantly CCR5-using
variants while most SI isolates contain both CXCR4 (SI) and CCR5
(NSI) variants. Some SI isolates may contain dual-tropic variants
that use both CXCR4 and CCR5 co-receptors. The isolate 92TH022 is
available from the NIH AIDS Reagent program, and is NSI R5.
FEATURES Location/Qualifiers
source 1..1176
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="92TH022"
/db_xref="taxon:11676"
gene <1..>1176
/gene="pol"
CDS <1..>1176
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol polyprotein"
/protein_id="AAC58222.1"
/db_xref="GI:2338332"
/translation="LWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGKWKPKMIG
GIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPISPIDT
VPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVFAIKK
KDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDES
FRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRMKNPEMIIY
QYMDELYVGSDLEIGQHRTKIEELRAHLLSWGFTTPDKKHQKEPPFLWMGYELHPDRW
TVQPIELPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIVPLTE
"
BASE COUNT 459 a 189 c 253 g 275 t
ORIGIN
1 ctttggcaac gaccccttgt cacaataaaa ataggaggac agctgaaaga agctctatta
61 gatacaggag cagatgatac agtattagaa gatataaatt tgccaggaaa atggaaacca
121 aaaatgatag ggggaattgg aggttttatc aaggtaaggc aatatgatca gatacttata
181 gaaatttgtg gaaaaaaggc tataggtaca gtattagtag gacctacgcc tgtcaacata
241 attggacgaa atatgttgac tcagcttggt tgtactttaa atttcccaat tagtcctatt
301 gacactgtac cagtaacatt aaagccagga atggatggac caaaggttaa acaatggcca
361 ttgacagaag aaaaaataaa agcattaaca gaaatttgta aagagatgga agaggaagga
421 aaaatttcaa aaattgggcc tgaaaatcca tacaatactc cagtatttgc tataaagaaa
481 aaggatagca ccaaatggag gaaattagta gatttcagag agctcaataa aagaactcag
541 gacttttggg aagttcaatt aggaataccg catccagcag gtttaaaaaa gaaaaaatca
601 gtaacagtac tagatgtggg agatgcatat ttttcagttc ctttagatga aagctttaga
661 aagtatactg cattcaccat acctagtata aacaatgaga caccaggaat cagatatcaa
721 tacaatgtgc tgccacaggg atggaaagga tcaccggcaa tattccagag tagcatgaca
781 aaaatcttag agccctttag aatgaaaaat ccagaaatga ttatctacca atacatggat
841 gagttatatg taggatctga tttagaaata gggcagcaca gaacgaaaat agaggagcta
901 agagctcatc tattgagctg gggatttact acaccagaca aaaagcatca gaaggaacct
961 ccattccttt ggatgggata tgaactccat cctgacagat ggacagtcca gcctatagaa
1021 ctgccagaaa aagacagctg gactgtcaat gatatacaga aattagtggg aaaactaaat
1081 tgggcaagtc aaatttatgc agggattaag gtaaagcaac tgtgtaaact cctcagggga
1141 gctaaagcac taacagacat agtaccactg actgaa
//
last modified: Tue May 31 10:56 2022