View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS AF009380 1175 bp DNA linear VRL 11-AUG-1997
DEFINITION HIV-1 isolate 92BR028 from Brazil, pol pseudogene, partial sequence
ACCESSION AF009380
VERSION AF009380.1 GI:2338311
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1175)
Show all sequences for reference 1
AUTHORS Cornelissen,M., van Den Burg,R., Zorgdrager,F., Lukashov,V. and
Goudsmit,J.
TITLE pol gene diversity of five human immunodeficiency virus type 1
subtypes: evidence for naturally occurring mutations that
contribute to drug resistance, limited recombination patterns, and
common ancestry for subtypes B and D
JOURNAL J. Virol. 71 (9), 6348-6358 (1997)
PUBMED 9261352
REFERENCE 2 (bases 1 to 1175)
Show all sequences for reference 2
AUTHORS Cornelissen,M.T.E., Van de Burg,R., Zorgdrager,F., Lukashov,V. and
Goudsmit,J.
TITLE Direct Submission
JOURNAL Submitted (19-JUN-1997) Department of Human Retrovirus Laboratory,
Academic Medical Centre, Meibergdreef 15, Amsterdam 1105AZ, The
Netherlands
REFERENCE 3
Show all sequences for reference 3
AUTHORS Gao,F., Yue,L., Craig,S., Thornton,C.L., Robertson,D.L.,
McCutchan,F.E., Bradac,J.A., Sharp,P.M. and Hahn,B.H.
TITLE Genetic variation of HIV type 1 in four World Health
Organization-sponsored vaccine evaluation sites: generation of
functional envelope (glycoprotein 160) clones representative of
sequence subtypes A, B, C, and E. WHO Network for HIV Isolation and
Characterization
JOURNAL AIDS Res. Hum. Retroviruses 10 (11), 1359-1368 (1994)
PUBMED 7888189
REFERENCE 4
Show all sequences for reference 4
AUTHORS WHO Global Programme on AIDS. and WHO Global Programme on AIDS
TITLE HIV type 1 variation in World Health Organization-sponsored vaccine
evaluation sites: genetic screening, sequence analysis, and
preliminary biological characterization of selected viral strains.
WHO Network for HIV Isolation and Characterization
JOURNAL AIDS Res. Hum. Retroviruses 10 (11), 1327-1343 (1994)
PUBMED 7545977
COMMENT Isolated from seropositive individual in Brazil (BR) for the DAIDS,
NIAID and the UNAIDS Network for HIV Isolation and
Characterization. Biotypes were determined by MT-2 syncytium assay;
however, both syncytium-inducing (SI) and non-syncytium-inducing
(NSI) variants may be present in the viral "swarm" for each
isolate. Recent studies indicate that NSI isolates contain
predominantly CCR5-using variants while most SI isolates contain
both CXCR4 (SI) and CCR5 (NSI) variants. Some SI isolates may
contain dual-tropic variants that use both CXCR4 and CCR5
co-receptors. The isolate 92BR028 is available from the NIH AIDS
Reagent program, and is NSI R5.
FEATURES Location/Qualifiers
source 1..1175
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="92BR028"
/db_xref="taxon:11676"
gene <1..>1175
/gene="pol"
/pseudo="pol"
CDS <1..>1175
/gene="pol"
/note="pol polyprotein"
/pseudo="pol polyprotein"
/codon_start="1"
/transl_table="1"
BASE COUNT 466 a 189 c 245 g 275 t
ORIGIN
1 ctttggcaac gacccctcgt cacaataaag ataggggggc aactaaagga agctctgtta
61 gatacaggag cagatgatac agtattagaa gaaatgaatt tgccaggaag atggaaacca
121 aaaatgatag ggggaattgg aggttttatc aaagtaagac agtatgatca gatacccata
181 gaaatctgtg gacaaaaagc tataggtaca gtattagtag gacctacacc tgtcaacata
241 attggaagaa atctgttgac tcagattggc tgcactttaa attttcccat tagtcctatt
301 gaaactgtac cagtaaaatt aaagccagga atggatggcc caaaagttaa acaatggcca
361 ttgacagaag aaaaaataaa agcattagta gaaatttgta cagaaatgga aaaggaagga
421 aaaatttcaa aaattgggcc tgaaaatcca tacaataccc cagtatttgc cataaagaaa
481 aaagacagta ctaaatggag aaaattagta gatttcagag aacttaataa gagaactcaa
541 gacttctggg aagttcaatt aggaatacca catcccgcag ggttaaaaaa gaaaaaatca
601 gtaacagtac tggatgtggg tgatgcatat ttttcagttc ccttagatga ggacttcagg
661 aagtatactg catttaccat acctagtata aataatgaga caccagggat tagatatcag
721 tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tattccaaag tagcatgaca
781 aaaatcttag aaccttttag aaaacaaaat ccagaaatag ttatctatca atacatggat
841 gatttgtatg taggatctga cttagaaata gggaagcata gaacaaaaat agaagaactg
901 agacaacatc tgttgaggtg gggatttacc acaccagaca aaaaacatca gaaagaacct
961 ccattctttg gatgggttat gaactccatc ctgataaatg gacagtacag cctatagtgc
1021 taccagaaaa agacagctgg actgtcaatg acatacagaa gttagtggga aaattgaatt
1081 gggcaagtca gatttatgca gggattaaag taaagcaatt atgtaaactc cttaggggaa
1141 ccaaatcact aacagaagta gtaccactaa cagca
//
last modified: Tue May 31 10:56 2022