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LOCUS	    AF009380		    1175 bp    DNA     linear	VRL 11-AUG-1997
DEFINITION  HIV-1 isolate 92BR028 from Brazil, pol pseudogene, partial sequence
ACCESSION   AF009380
VERSION     AF009380.1 GI:2338311
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1175)
            Show all sequences for reference 1
  AUTHORS   Cornelissen,M., van Den Burg,R., Zorgdrager,F., Lukashov,V. and
	    Goudsmit,J.
  TITLE     pol gene diversity of five human immunodeficiency virus type 1
	    subtypes: evidence for naturally occurring mutations that
	    contribute to drug resistance, limited recombination patterns, and
	    common ancestry for subtypes B and D
  JOURNAL   J. Virol. 71 (9), 6348-6358 (1997)
  PUBMED    9261352
REFERENCE   2 (bases 1 to 1175)
            Show all sequences for reference 2
  AUTHORS   Cornelissen,M.T.E., Van de Burg,R., Zorgdrager,F., Lukashov,V. and
	    Goudsmit,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUN-1997) Department of Human Retrovirus Laboratory,
	    Academic Medical Centre, Meibergdreef 15, Amsterdam 1105AZ, The
	    Netherlands
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Gao,F., Yue,L., Craig,S., Thornton,C.L., Robertson,D.L.,
	    McCutchan,F.E., Bradac,J.A., Sharp,P.M. and Hahn,B.H.
  TITLE     Genetic variation of HIV type 1 in four World Health
	    Organization-sponsored vaccine evaluation sites: generation of
	    functional envelope (glycoprotein 160) clones representative of
	    sequence subtypes A, B, C, and E. WHO Network for HIV Isolation and
	    Characterization
  JOURNAL   AIDS Res. Hum. Retroviruses 10 (11), 1359-1368 (1994)
  PUBMED    7888189
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   WHO Global Programme on AIDS. and WHO Global Programme on AIDS
  TITLE     HIV type 1 variation in World Health Organization-sponsored vaccine
	    evaluation sites: genetic screening, sequence analysis, and
	    preliminary biological characterization of selected viral strains.
	    WHO Network for HIV Isolation and Characterization
  JOURNAL   AIDS Res. Hum. Retroviruses 10 (11), 1327-1343 (1994)
  PUBMED    7545977
COMMENT     Isolated from seropositive individual in Brazil (BR) for the DAIDS,
	    NIAID and the UNAIDS Network for HIV Isolation and
	    Characterization. Biotypes were determined by MT-2 syncytium assay;
	    however, both syncytium-inducing (SI) and non-syncytium-inducing
	    (NSI) variants may be present in the viral "swarm" for each
	    isolate. Recent studies indicate that NSI isolates contain
	    predominantly CCR5-using variants while most SI isolates contain
	    both CXCR4 (SI) and CCR5 (NSI) variants. Some SI isolates may
	    contain dual-tropic variants that use both CXCR4 and CCR5
	    co-receptors. The isolate 92BR028 is available from the NIH AIDS
	    Reagent program, and is NSI R5.
FEATURES             Location/Qualifiers
     source	     1..1175
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="92BR028"
		     /db_xref="taxon:11676"
     gene	     <1..>1175
		     /gene="pol"
		     /pseudo="pol"
     CDS	     <1..>1175
		     /gene="pol"
		     /note="pol polyprotein"
		     /pseudo="pol polyprotein"
		     /codon_start="1"
		     /transl_table="1"
BASE COUNT	466 a	 189 c	  245 g    275 t
ORIGIN
       1 ctttggcaac gacccctcgt cacaataaag ataggggggc aactaaagga agctctgtta 
      61 gatacaggag cagatgatac agtattagaa gaaatgaatt tgccaggaag atggaaacca 
     121 aaaatgatag ggggaattgg aggttttatc aaagtaagac agtatgatca gatacccata 
     181 gaaatctgtg gacaaaaagc tataggtaca gtattagtag gacctacacc tgtcaacata 
     241 attggaagaa atctgttgac tcagattggc tgcactttaa attttcccat tagtcctatt 
     301 gaaactgtac cagtaaaatt aaagccagga atggatggcc caaaagttaa acaatggcca 
     361 ttgacagaag aaaaaataaa agcattagta gaaatttgta cagaaatgga aaaggaagga 
     421 aaaatttcaa aaattgggcc tgaaaatcca tacaataccc cagtatttgc cataaagaaa 
     481 aaagacagta ctaaatggag aaaattagta gatttcagag aacttaataa gagaactcaa 
     541 gacttctggg aagttcaatt aggaatacca catcccgcag ggttaaaaaa gaaaaaatca 
     601 gtaacagtac tggatgtggg tgatgcatat ttttcagttc ccttagatga ggacttcagg 
     661 aagtatactg catttaccat acctagtata aataatgaga caccagggat tagatatcag 
     721 tacaatgtgc ttccacaggg atggaaagga tcaccagcaa tattccaaag tagcatgaca 
     781 aaaatcttag aaccttttag aaaacaaaat ccagaaatag ttatctatca atacatggat 
     841 gatttgtatg taggatctga cttagaaata gggaagcata gaacaaaaat agaagaactg 
     901 agacaacatc tgttgaggtg gggatttacc acaccagaca aaaaacatca gaaagaacct 
     961 ccattctttg gatgggttat gaactccatc ctgataaatg gacagtacag cctatagtgc 
    1021 taccagaaaa agacagctgg actgtcaatg acatacagaa gttagtggga aaattgaatt 
    1081 gggcaagtca gatttatgca gggattaaag taaagcaatt atgtaaactc cttaggggaa 
    1141 ccaaatcact aacagaagta gtaccactaa cagca
//
last modified: Tue May 31 10:56 2022


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